Eduardo Gonzalez Grandio

It seems that the URL for the databases has changed from `eggnogdb `to `eggnog5`. You can modify the script manually: ``` sed -i 's|eggnogdb.embl.de|eggnog5.embl.de|g' ~/miniconda3/bin/download_eggnog_data.py download_eggnog_data.py ```

Hello, I think that using custom `seqlevelStyles `also raises a problem in `addGeneAnnotation()`. Modifying the seqlevels of the gr object: ``` K326_txdb % seqlevelsStyle() [1] "ASM9120v1" gr % filter(!polyA &...

Hello, I was able to obtain the overlapping offtarget genes with a custom script, but I guess that more people that want to use their custom genome/annotations might find the...

Yes. In that case I got this error when I tried to add gene annotations: ``` Error in .new_IRanges_from_start_end(start, end) : 'start' or 'end' cannot contain NAs ``` I had...

Nope. I was mentioning it because I had to upgrade to use the customs seqlevels. But it did not fix the issue, it just gave a different error.

I have tried to run the whole `braker.pl` pipeline and it failed again at the same step. I checked again, and I could run it "manually". Following the advice from...