eggnog-mapper
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eggnogdb
Fast genome-wide functional annotation through orthology assignment
Hello, I'm having this problem already for a while when running emapper.py using the hmmer search. I'm running it on a cluster which uses the SLURM workload manager. So far...
Hello, I have performed functional annotation and wanted to get all the possible GO terms from the given genome of Chironomus riparius. I have only used protein sequences of CDS...
Hi, I use eggnog-mapper to annotate large sets of metagenomic datasets, e.g. the GMGC (GMGC10.95nr.faa.gz >> 300 million sequences). In a recent experiment, I found that the the annotation results...
I am having an issue after submitting my FASTA file of proteomics data. This is showing. I have always used the website with the same FASTA file. can someone please...
Hi, I am new to Eggnog-Mapper and barely have experience on using Python. Previously I attempted to install it on Windows computer but failed to run it for some problems...
Hi there, For some background, I am trying to build a presence/absence matrix of genes from >500 diverse genomes. But I find that eggnog-mapper does not always give me the...
Hello, I noticed that some of the genes I have were assigned to eukaryotes as a result of diamond blastp, but when I used eggnog-mapper they were assigned to prokaryote...
Hi, Diamond seems to have fixed lots of bugs and implemented some nice upgrades. Please, can we have an update of the version used within eggnog-mapper?
Hello, I am using eggnog to functionally annotate proteins of 276 species. After using EggNog, the protein headers do not have any information about the gene. For example, this is...
When using 100 queries or more as input, if `--pfam_realign denovo` is used, hmmpgmd servers should be fired up. This is failing for `emapper.py` (v2.1.2) due to using the spawn...
