eggnog-mapper
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eggnogdb
Fast genome-wide functional annotation through orthology assignment
Hello, I was hoping you may be able to clarify a COG annotation question. Apologies if this is a silly question I've just struggled to find an answer and I'm...
First of all, thanks for the great tool. I am a rookie at the field, but EggNOG is being really helpful so far, so thank you very much! I have...
Hello! two questions regarding eggnog-mapper EC annotations: 1. How does eggnog-mapped infer EC classification? By motifs/domains? 2. When a protein is annotated with several matching EC numbers, does this imply...
I am facing the error 'struct.error: unpack requires a buffer of 16 bytes' when running Eggnog-mapper (v2.1.7) with Hmmer 3.1b2. Follow the command that is being used: emapper.py -m hmmer...
I'm working on the Galaxy wrapper for the eggnog mapper. We observe very low CPU usage (~1% for each of the 10 cores). While debugging I noticed approx 4-5000 failed...
Hello, I am slightly confused on how to interpret queries assigned to OGs defined at different taxonomic levels as shown below: ``` #query eggNOG_OGs Preferred_name COG_category GOs EC KEGG_ko KEGG_Pathway...
Dear author, when i run emapper.py with the command line: "emapper.py -i q2.fa --output diamond_bact_ -m hmmer -d ~/soft/eggnog-mapper/data/ I receive the error "Unrecognized tax ID, tax name or tax_scope...
Hi, I am trying to follow the instructions on the website for doing the annotations and I would appreciate some help. I am an amateur but trying to learn. I...
 Hello, thank you very much for writing this software, this software has helped me a lot. But I encountered a problem when using the web version. The value parameter...
Hello, I am running emapper-2.1.7 on a HPC cluster with job arrays via Slurm. I have chunks of 500 CDS files for running in parallel. When I run emapper on...
