José Luis Villanueva-Cañas

Same problem here

@sa-lee Have you resolved this issue? I don't understand if the function provided by @alexyfyf is valid or not.

It is also very useful as a control when running multiple clinical samples. We can cross the expected sex for the sample with the sex determination done to detect possible...

Hi, For clinical environments it would be great to have a depth calculation tool. Mosdepth is a winner, as already suggested. Another important tool would be a cnv caller. Manta...

Package sleuth version 0.28.1 The file is tab separated, containing n columns.

Same issue here. Did you solve it?

Hi, I see! I will download the latest singularity container. I have noticed that in the documentation it links to the v1.5.5 version: https://bactopia.github.io/installation/ Best, JL

I also get a similar error using -profile singularity

Hi, This is the assembly-scan output of one of the samples: ``` assembly-scan 20591-SAL1-598_S15_L001.fna.gz sample total_contig total_contig_length max_contig_length mean_contig_length median_contig_length min_contig_length n50_contig_length l50_contig_count num_contig_non_acgtn contig_percent_a contig_percent_c contig_percent_g contig_percent_t contig_percent_n contig_non_acgtn...

Sure, I just sent you an email to your gmail account.