Chris Markiewicz
Chris Markiewicz
It looks like these 9 files are corrupted, server-side: ``` fsck sub-02/ses-1/func/sub-02_ses-1_task-rest_acq-MBME_run-02_echo-5_part-mag_bold.nii.gz sub-02/ses-1/func/sub-02_ses-1_task-rest_acq-MBME_run-02_echo-5_part-mag_bold.nii.gz: Bad file size (40.09 MB smaller); moved to .git/annex/bad/SHA256E-s218670986--5e3fd400ba7e3f2b64b6b6d5a86f5e3e24b5a5a8bf5006f2aa3325c747021a7d.nii.gz failed fsck sub-03/ses-2/func/sub-03_ses-2_task-rest_acq-MBME_run-02_echo-3_part-mag_bold.nii.gz sub-03/ses-2/func/sub-03_ses-2_task-rest_acq-MBME_run-02_echo-3_part-mag_bold.nii.gz: Bad file size (21.72...
After investigating, the error arose on the client side, pushing corrupted files to OpenNeuro. Whether they were corrupted (truncated) during transfer or before is somewhat moot; we should error if...
Here are the outstanding issues I can see, given the current state of the pull requests: 1) `SIDECAR_WITHOUT_DATAFILE` errors. I have pointed @bclenet to where this would need to be...
I had a chance to talk with @rwblair about the arbitrary subdirectories yesterday. At least from the examples given (`/prov/preprocspm/prov-preprocspm{1,2}_*.json`), the idea is to allow grouping, which BIDS generally does...
I have no objections to keeping it flat. I was under the impression that nesting was important.
> would that be somehow consistent with the rest of BIDS and wouldn't introduce difficulty? I do not remember any other entity for which we have it optional kinda. We...
@cmaumet @bclenet Let's schedule a call: https://www.when2meet.com/?33661829-Yw724 Please forward to anybody you want on there.
> @cmaumet @bclenet Let's schedule a call: https://www.when2meet.com/?33661829-Yw724 > @cmaumet Did you want to be on the call? Yes! I think our messages just crossed each other. I just sent...
Yes, I think including templateflow would be very helpful both for sources and spatial references.
Each of these is an atomic transform. orig-to-boldref + boldref-T1w are strung together to get the individual volume there, but boldref-to-fmap is used to transform the fieldmap into the boldref...