edkonyakhina

Hello! I also have the same problem. I am trying to build index, using GRCh38 reference connected with it's introns, but Bawtie2 doesn't produce reverse indexes. My input is: bowtie2-build...

Hello! Thank you for answer! I will inform you about results. Many thanks, Evgeniya

Unfortunately, while running this alpha build rev files also weren't produced. And one of *.bt2 files was made empty. Many thanks, Evgeniya

No. I don't use conda, I recognized that it was my fault. I used too big file, that I didn't need. Now all works okey. Thank you for ypur attention...

Hi @julsssen, Did you find a solution of this problem? I have the same and I don't know, what to do with it. Many thanks, Evgeniya

@ifantasy Did you find a solution of this problem? I have the same.

I would also like to use kallisto or other quantification tool, because Express often runs out of memory on my data.

Hello, @adamtongji ! I have the same problem. If you find any solution, please let me know!

@adamtongji Thank you for you help! Now it works well!

Hi, @gupta567varun! Did you fixed it? I have the same problem.