ciftify
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edickie
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
Hi Dr. Dickie: I notice that in the LR 32k surfaces, the subcortical region are missing. Is there any ways we can add the subcrotical regions? (some of our ROIs...
Hi: For the input spreadsheet to PINT, how do we suppose to find the vertex id corresponding to the given MNI coordinates? Best, Renxi
Hi, ciftify gives me the following error: /Users/neurolab/opt/anaconda3/lib/python3.7/site-packages/ciftify/utils.py:286: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. config = yaml.load(yaml_stream)...
I preprocessed my data using fmriprep. I'd like to use the data that's transformed to the MNI Asymmetric template and been denoised with AROMA (e.g., *bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz). For ciftify_subject_fmri I used...
Hi Erin, Thank you very much for your wonderful scripts. By the way, I have a question about the DKT atlas described in ciftify_peaktable.py. The script uses cvs_avg35_inMNI152.aparc.32k_fs_LR.dlabel.nii. I thought...
Sorry, this is more a question than an issue: Is there a difference between the cifti files that fmriprep can generate, and your cifti files? Thanks so much, Dianne
I'm trying to run cifti_vis_fmri with my own data, but there was something wrong with overlays of the functional volume and the pial surface, how can i locate the problems?
Hello, I have a question regarding the usage of *ciftify_statclust_report*. I recently ran FSL’s *MELODIC* on my resting-state fMRI data to generate several independent components, and now I would like...
I'm having a problem with msm in ciftify_recon_all that I think has to do with an issue with loading the msm configuration file. I have double-checked that the msm binary...
Could an extra command line argument be added to ignore the bids validator?
