ciftify
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edickie
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
Dear community: I have the following error. I tried running from sudo su but the same error pops up. ciftify_recon_all --surf-reg FS --fs-subjects-dir '/media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Freesurfer/controls' --ciftify-work-dir '/media/andraderenew/Elements/backup_1TB/image_databases/anorexia/results/Diffusion/ciftify' s25633_T1MPRAGE_1mm_reconall Traceback (most recent...
Hi, I am having troubles with using MSM for ciftify (FS-Reg works) Do I have to install fsl from source code with that here FslInstallation/SourceCode - FslWiki It wont work...
I'm trying to use `ciftify_peaktable` and `ciftify_statclust_report` with the --output-peaks flag to generate reports for statistical maps. Unfortunately, `ciftify_peaktable` throws an error when trying to call the `cluster` function. Here...
Hi, I'm running ciftify_bids_app using singularity. Usually it works great, but sometimes it fails with message: ``` cmd: ciftify_recon_all --n_cpus 1 --ciftify-work-dir /data/ciftify --fs-subjects-dir /data/freesurfer --surf-reg MSMSulc sub-SBJ1 Failed with...
It seems like the main fix happening is the use of repetition time as the second argument to `np.fft.fftfreq` on line 178, instead of 1. The two tests in `tests/functional/test_ciftify_falff.py`...
The 'Quick Start' link on the top right of the docs site is currently a 404 page because the file name is incorrect.
This corrects a few more deprecation exceptions
This fixes issues with the 'exclude' flag being invalid in newer versions of pybids, and corrects the spelling of .extension
Fix https://github.com/edickie/ciftify/issues/170
Hello, I'm trying to get more information about a seed-to-voxel correlation dscalar file, generated with ciftify_seed_corr. I tried ciftify_peaktable and ciftify_statclust_report but got the same error: AttributeError: 'Index' object has...
