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edickie
overlays of the functional volume and the pial surface error
I'm trying to run cifti_vis_fmri with my own data, but there was something wrong with overlays of the functional volume and the pial surface, how can i locate the problems?
That looks like a major realignment failure during the pipeline run (i.e. it's not cifti_vis_fmri, your preprocessed outputs are actually that bad - and the functional data was not sampled to the correct surface locations).
I had a problem like this with one dataset, where the anatomical image had a high resolution and (after trying for weeks) the only way I could fix the problem was by rerunning fmriprep with the --no-submm-recon flag. (this could also be done by rerunning fmriprep_ciftify with --fmriprep-args="--no-submm-recon")
you can visualize the problem interactively by opening the files in wb_view
wb_view sub-<subid>/MNINonLinear/fsaverage_LR32k/sub-<subid>.32k_fs_LR.wb.spec
(then inside the viewer, open the fail fmri dtseries.
I have a problem in compiling newmesh, MSM,.... The error is default.mk, not found! Anyone who can help me?
