GREEN-VARAN
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edg1983
Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF
There is error when querying by tabix (version 1.18) using the downloaded tbi files. But the same commands work fine if re-indexed. * GRCh37: ``` $ wget https://zenodo.org/records/5705936/files/GRCh37_TADs.bed.gz https://zenodo.org/records/5705936/files/GRCh37_TADs.bed.gz.tbi $...
Dear edg1983 As README mentioned, 3 set of information should in my input VCF before use GREEN. Just now, I can only add gnomAD informations to input VCF use annotate...
Hello, edg1983. I have recently been focusing on the annotation and interpretation of non-coding region variants. I was fortunate to learn about the annotation tool you developed and am very...
Dear @edg1983 , I've noticed two things in the FATHMM files from https://zenodo.org/records/3981121: ## 1 ``` $ tabix GRCh38_FATHMM-MKL_NC.tsv.gz chr21:8799168-8799168 chr21 8799168 A C 0.86574 chr21 8799168 A G 0.84918...
Hi, I am using GreenDB via the Nextflow pipeline, which I cloned from GitHub about a month ago, with an input VCF that was annotated using VEP. In previous versions...
