Missing Files

[Ghaiyur]

The referenced files folds_split_mimic.py and mimic_prepoc.py are missing from the repo

[exowanderer]

Same issue here with double_OU_gru_ode_bayes_demo_params.npy.

---

Traceback

Demo Mode - Loading model for double_OU ....
Traceback (most recent call last):
  File "double_ou_gruode.py", line 25, in <module>
    gru_ode_bayes.paper_plotting.plot_trained_model(model_name = "double_OU_gru_ode_bayes_demo")
  File "$HOME/github/gru_ode_bayes/gru_ode_bayes/paper_plotting.py", line 25, in plot_trained_model
    summary_dict=np.load(f"./../trained_models/{model_name}_params.npy",allow_pickle=True).item()
  File "$HOME/anaconda3/envs/pytorch/lib/python3.8/site-packages/numpy/lib/npyio.py", line 428, in load
    fid = open(os_fspath(file), "rb")
FileNotFoundError: [Errno 2] No such file or directory: './../trained_models/double_OU_gru_ode_bayes_demo_params.npy'

[tql247]

Same... When I run python process.py in /data_preproc/Climate folder

Traceback (most recent call last):
  File "process.py", line 231, in <module>
    clean_and_subsample()
  File "process.py", line 87, in clean_and_subsample
    df =  pd.read_csv("daily_merged.csv")
  File "/home/lian/.local/lib/python3.8/site-packages/pandas/io/parsers.py", line 676, in parser_f
    return _read(filepath_or_buffer, kwds)
  File "/home/lian/.local/lib/python3.8/site-packages/pandas/io/parsers.py", line 448, in _read
    parser = TextFileReader(fp_or_buf, **kwds)
  File "/home/lian/.local/lib/python3.8/site-packages/pandas/io/parsers.py", line 880, in __init__
    self._make_engine(self.engine)
  File "/home/lian/.local/lib/python3.8/site-packages/pandas/io/parsers.py", line 1114, in _make_engine
    self._engine = CParserWrapper(self.f, **self.options)
  File "/home/lian/.local/lib/python3.8/site-packages/pandas/io/parsers.py", line 1891, in __init__
    self._reader = parsers.TextReader(src, **kwds)
  File "pandas/_libs/parsers.pyx", line 374, in pandas._libs.parsers.TextReader.__cinit__
  File "pandas/_libs/parsers.pyx", line 674, in pandas._libs.parsers.TextReader._setup_parser_source
FileNotFoundError: [Errno 2] File daily_merged.csv does not exist: 'daily_merged.csv'

I get ushcn data from ftp://ftp.ncdc.noaa.gov/pub/data/ushcn/daily/. I hope someone could tell me why daily_merged.csv is missing....

[matthewvowels1]

Same issue here with double_OU_gru_ode_bayes_demo_params.npy.

Traceback

Demo Mode - Loading model for double_OU ....
Traceback (most recent call last):
  File "double_ou_gruode.py", line 25, in <module>
    gru_ode_bayes.paper_plotting.plot_trained_model(model_name = "double_OU_gru_ode_bayes_demo")
  File "$HOME/github/gru_ode_bayes/gru_ode_bayes/paper_plotting.py", line 25, in plot_trained_model
    summary_dict=np.load(f"./../trained_models/{model_name}_params.npy",allow_pickle=True).item()
  File "$HOME/anaconda3/envs/pytorch/lib/python3.8/site-packages/numpy/lib/npyio.py", line 428, in load
    fid = open(os_fspath(file), "rb")
FileNotFoundError: [Errno 2] No such file or directory: './../trained_models/double_OU_gru_ode_bayes_demo_params.npy'

This can be quickly solved by running double_OU.py which generates the metadata file

[HoJ-Onle]

Same issue here with double_OU_gru_ode_bayes_demo_params.npy.

Traceback

Demo Mode - Loading model for double_OU ....
Traceback (most recent call last):
  File "double_ou_gruode.py", line 25, in <module>
    gru_ode_bayes.paper_plotting.plot_trained_model(model_name = "double_OU_gru_ode_bayes_demo")
  File "$HOME/github/gru_ode_bayes/gru_ode_bayes/paper_plotting.py", line 25, in plot_trained_model
    summary_dict=np.load(f"./../trained_models/{model_name}_params.npy",allow_pickle=True).item()
  File "$HOME/anaconda3/envs/pytorch/lib/python3.8/site-packages/numpy/lib/npyio.py", line 428, in load
    fid = open(os_fspath(file), "rb")
FileNotFoundError: [Errno 2] No such file or directory: './../trained_models/double_OU_gru_ode_bayes_demo_params.npy'

I think maybe you should create a folder "trained_models" at first.