edcee

Here is my error: Error in solve.default(CtC) : system is computationally singular: reciprocal condition number = 1.4343e-22 And this is my code: SVsignatures_exp

Sequence length in /share/home/luoylLab/zengyuchen/PROJECT/Circular_Cloud/02.Wuxiaoqiu/25CN/antibody_capture/Ab_C0042-25CN/trimming/Ab_C0042-25CN_S0_L001_R1_001.fastq.gz is not consistent. Please, trim all sequences at the same length.

How can I run PrepareAA with tumor only sample(WGS)?

14

I have some samples -only tumour, no any normal samples as control, and here is my code for these pipeline, it's OK? python3 /share/home/luoylLab/zengyuchen/biosoft/AmpliconSuite-pipeline/PrepareAA.py -s \${tumor} -t 10 --ref GRCh38...

Errors: libicuuc.so.54 not found

1

Type: Exception: libicuuc.so.54: cannot open shared object file: No such file or directory Traceback: File "/share/home/luoylLab/zengyuchen/biosoft/2020plus-1.2.3/2020plus.py", line 263, in import src.classify.python.classifier File "/share/home/luoylLab/zengyuchen/biosoft/2020plus-1.2.3/src/classify/python/classifier.py", line 3, in from src.classify.python.r_random_forest_clf import RRandomForest...