jcast
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ed-lau
Junction centric alternative splicing translator
Hi. I am trying to run JCAST 0.3.5 but I want to run the analysis for one specific rMATS output. I attempt to use the --splice_type optional argument but the...
I get the following error: ``` usage: __main__.py [-h] [-o OUT] [-r READ] [-m] [-c] [-q q_lo q_hi] [--g_or_ln G_OR_LN] rmats_folder gtf_file genome __main__.py: error: unrecognized arguments: --splice_type /Users/naqvia/Downloads/hg38.fa ```...
ORF error?
Hello, I'm getting consistently this error (the KeyError sometimes changes): `Traceback (most recent call last): File "/home/mos6/venv/bin/jcast", line 8, in sys.exit(main()) File "/home/mos6/venv/lib/python3.8/site-packages/jcast/main.py", line 438, in main args.func(args) File "/home/mos6/venv/lib/python3.8/site-packages/jcast/main.py",...
Hello, I want to start by saying that you guys have made a really awesome tool and it works like a charm! Great work! I'd like to make a suggestion...
Hello again, Using **pip uninstall** I removed the python 1.78 following which I downloaded biopython 1.77 from the source page and installed it using **python setup.py install** method. The installation...
I saw the titled paper "Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome". In Figure 6D, there are some alternative slicing event example included in heatmap. I want to...
