Erica Wood

Results 183 comments of Erica Wood

In order to get some sample CURIES, I ran: ``` match (n) where (n.provided_by="['infores:hpo']") and not (n.description contains "STY") return n.id, n.name, n.description limit 10 ``` since it's easy to...

This is the only relation with a `qualified_predicate` that is not `biolink:affects`. Overall, this looks a little weird, so we are going to get rid of it. https://github.com/RTXteam/RTX-KG2/blob/34f2b4a03eb2b855eb41af783ea03b0a72401b48/predicate-remap.yaml#L1590-L1595

@saramsey I deleted the `qualified_predicate` line, but kept the qualifiers. I'm not sure if that is valid: https://github.com/RTXteam/RTX-KG2/blob/9aa895416f9ff7abbae5fb699869244ea908a2c0/predicate-remap.yaml#L1590-L1594

I ran: ![image](https://user-images.githubusercontent.com/36611732/88711688-6899bb80-d0cd-11ea-971d-a5ab912ffaf7.png) And got the following output: ![image](https://user-images.githubusercontent.com/36611732/88711613-4acc5680-d0cd-11ea-9e47-3d84de635242.png) This suggests that - SEMMEDDB - HL7 - MTH - MEDLINEPLUS - ChemBL Compound all provide edge scores.

Also, both IntAct and DisGeNET have edge scores but due to issue RTXteam/RTX-KG2#23, I didn't store them anywhere (since they're not tied to a particular PMID and it seems a...

I can try to work on this in the next few weeks. I like the idea of a version-named folder on S3 to avoid clutter.

This should be done now. It will look something like `kg2-tsv-for-neo4j-KG2.X.Y.tar.gz` in the next build.

This was successful in the KG2.10.1pre build, other than the report compare (as described here: https://github.com/RTXteam/RTX-KG2/issues/408#issuecomment-2336826509), so I am closing out this issue.

When I tried to test this out, I was notified that `graphviz` is already installed: ``` ubuntu@ip-172-31-59-112:~/kg2-build$ ~/kg2-venv/bin/pip3 install graphviz==0.20.1 Requirement already satisfied: graphviz==0.20.1 in /home/ubuntu/kg2-venv/lib/python3.7/site-packages (0.20.1) [notice] A new...