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Malformed XML format in CHEBI:16551
Hi,
it seems ChEBI writes broken XML files with sharp brackets unescaped (actually should be <
and >
, respectively), breaking the XML syntax:
Debug: File CHEBI:16551.xml
Traceback (most recent call last):
File "blah.py", line 252, in parse_chebi_xml
etree=ET.parse(filename)
File "/usr/lib/python3.9/xml/etree/ElementTree.py", line 1229, in parse
tree.parse(source, parser)
File "/usr/lib/python3.9/xml/etree/ElementTree.py", line 580, in parse
self._root = parser._parse_whole(source)
xml.etree.ElementTree.ParseError: not well-formed (invalid token): line 23, column 25
See the line 23 in the CHEBI:16551 entry.
With best regards, Martin