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Published 20 hours ago • verified publisher icon easybuilders

{lang}[GCC/13.2.0,GCCcore/13.2.0,gfbf/2023b] SOCI v4.0.3, yaml-cpp v0.8.0, RStudio-Server v2023.12.1+402 w/ Java 11 R 4.3.3

Open lazariv opened this issue 1 year ago • 12 comments

(created using eb --new-pr)

  • [x] Requires #20047

Changes compared to RStudio-Server-2022.07.2%2B576-foss-2022a-Java-11-R-4.2.1.eb:

  • Patch RStudio-Server-2022.07.1+554_allow-disabling-quarto.patch not required, fixed in https://github.com/rstudio/rstudio/commit/9b7ac4b2952a47568d23f6cbfed4a797798ee161
  • Patch RStudio-Server-2022.07.1+554_fix-libsoci-search.patch fixed with https://github.com/rstudio/rstudio/pull/11691
  • Patch RStudio-Server-2022.07.1+554_use-XDG_CACHE_HOME.patch fixed with https://github.com/rstudio/rstudio/pull/11976
  • ('nodejs', '20.9.0') required for building: https://github.com/rstudio/rstudio/blob/4da58325ffcff29d157d9264087d4b1ab27f7204/src/gwt/build.xml#L142

lazariv avatar Mar 07 '24 08:03 lazariv

Test report by @lazariv FAILED Build succeeded for 4 out of 5 (5 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/f5a3f5f6ed2ab1c4b20df6022bfbf33d for a full test report.

lazariv avatar Mar 07 '24 08:03 lazariv

Test report by @lazariv FAILED Build succeeded for 4 out of 5 (5 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/bf98d51fc59b2fd2fa6343ae9f471ccf for a full test report.

I suspect you have parallel installations there as the error complains about missing package "brio" in R

as for combining ECs for PRs: It is usually better to open individual/smaller PRs. You did that for R itself, so don't include that EC here in this PR. Same for libgit2 which is a dependency of R and also in that other PR. Having them in both PR results in needless and potentially conflicting rebuilds.

Flamefire avatar Mar 07 '24 12:03 Flamefire

Test report by @lazariv SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/fe837b728a1a0c4beba72f3220ac7b64 for a full test report.

lazariv avatar Mar 07 '24 13:03 lazariv

Test report by @lazariv SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/9adb3a1c254361eda6aaf015591123f2 for a full test report.

lazariv avatar Mar 07 '24 16:03 lazariv

Test report by @lazariv FAILED Build succeeded for 1 out of 3 (3 easyconfigs in total) n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13 See https://gist.github.com/lazariv/e2acd25d64b09f3afdf3a5afff5df1ee for a full test report.

lazariv avatar Mar 08 '24 20:03 lazariv

Test report by @lazariv FAILED Build succeeded for 1 out of 3 (3 easyconfigs in total) n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13 See https://gist.github.com/lazariv/e2acd25d64b09f3afdf3a5afff5df1ee for a full test report.

Only Boost/1.83.0 and PostgreSQL/16.1 is missing. Rebuilding with --robot should install those

Flamefire avatar Mar 09 '24 10:03 Flamefire

Test report by @lazariv SUCCESS Build succeeded for 7 out of 7 (3 easyconfigs in total) n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13 See https://gist.github.com/lazariv/cf69a7c55bdf29cab9a387deb071ef16 for a full test report.

lazariv avatar Mar 09 '24 13:03 lazariv

Test report by @lazariv SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 1 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/9db90733135bf3c503dea714e5e0f466 for a full test report.

lazariv avatar Mar 11 '24 08:03 lazariv

Test report by @verdurin SUCCESS Build succeeded for 24 out of 24 (3 easyconfigs in total) easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8 See https://gist.github.com/verdurin/ed8bf4875f945baab24e0168fefe99dc for a full test report.

verdurin avatar Mar 13 '24 12:03 verdurin

@boegelbot please test @ generoso

verdurin avatar Mar 13 '24 12:03 verdurin

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 13089

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).

boegelbot avatar Mar 13 '24 12:03 boegelbot

Test report by @boegelbot SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/boegelbot/bdda13cd300a2c318e5b6cfadcf185eb for a full test report.

boegelbot avatar Mar 13 '24 13:03 boegelbot

@jfgrimm anything should be done here?

lazariv avatar May 24 '24 12:05 lazariv

@lazariv no, this looks ready to be merged. I'll send the last remaining mandatory test.

lexming avatar May 27 '24 16:05 lexming

@boegelbot: please test @ generoso

lexming avatar May 27 '24 16:05 lexming

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 13571

Test results coming soon (I hope)...

- notification for comment with ID 2133791595 processed

Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).

boegelbot avatar May 27 '24 16:05 boegelbot

Test report by @boegelbot SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/boegelbot/cc1c3c135fa670cb8bebf26caf92007b for a full test report.

boegelbot avatar May 27 '24 16:05 boegelbot

@boegelbot please test @ jsc-zen3

lexming avatar May 27 '24 21:05 lexming

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 4225

Test results coming soon (I hope)...

- notification for comment with ID 2134059566 processed

Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).

boegelbot avatar May 27 '24 21:05 boegelbot

Test report by @boegelbot FAILED Build succeeded for 2 out of 3 (3 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18 See https://gist.github.com/boegelbot/b37d2f9d0084209b783fcaae93b34dae for a full test report.

boegelbot avatar May 27 '24 21:05 boegelbot

@boegelbot please test @ jsc-zen3

lexming avatar May 27 '24 21:05 lexming

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 4226

Test results coming soon (I hope)...

- notification for comment with ID 2134070963 processed

Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).

boegelbot avatar May 27 '24 21:05 boegelbot

Test report by @boegelbot SUCCESS Build succeeded for 3 out of 3 (3 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18 See https://gist.github.com/boegelbot/664b18c5cf02d95aa394c3d271c948cb for a full test report.

boegelbot avatar May 27 '24 21:05 boegelbot

Merging, thanks @lazariv !

lexming avatar May 27 '24 22:05 lexming