easybuild-easyconfigs
easybuild-easyconfigs copied to clipboard
Published
20 hours ago •
easybuilders
easybuilders
{lib}[foss/2021b] DeepLabCut v2.2.1.1 w/ Python 3.9.6
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3104019229 Output from first failing test suite run:
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
dep_graph(fn, self.ordered_specs)
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 834, in test_dep_versions_per_toolchain_generation
for ec in self.ordered_specs:
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
FAIL: test_pr_python_packages (test.easyconfigs.easyconfigs.EasyConfigTest)
Several checks for easyconfigs that install (bundles of) Python packages.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 1058, in test_pr_python_packages
self.fail('\n'.join(failing_checks))
AssertionError: sanity_pip_check should be enabled in DeepLabCut-2.2.1.1-foss-2021b.eb
----------------------------------------------------------------------
Ran 15366 tests in 779.511s
FAILED (failures=1, errors=3)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3263935801 Output from first failing test suite run:
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
dep_graph(fn, self.ordered_specs)
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 837, in test_dep_versions_per_toolchain_generation
for ec in self.ordered_specs:
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
FAIL: test_pr_python_packages (test.easyconfigs.easyconfigs.EasyConfigTest)
Several checks for easyconfigs that install (bundles of) Python packages.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 1061, in test_pr_python_packages
self.fail('\n'.join(failing_checks))
AssertionError: sanity_pip_check should be enabled in DeepLabCut-2.2.1.1-foss-2021b.eb
----------------------------------------------------------------------
Ran 15503 tests in 799.497s
FAILED (failures=1, errors=3)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3264432326 Output from first failing test suite run:
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
dep_graph(fn, self.ordered_specs)
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 837, in test_dep_versions_per_toolchain_generation
for ec in self.ordered_specs:
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b (no easyconfig file or existing module found)'
----------------------------------------------------------------------
Ran 15503 tests in 710.123s
FAILED (errors=3)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3314217067 Output from first failing test suite run:
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 839, in test_dep_versions_per_toolchain_generation
for ec in self.ordered_specs:
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'
======================================================================
FAIL: test__parse_easyconfig_DeepLabCut-2.2.1.1-foss-2021b.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig DeepLabCut-2.2.1.1-foss-2021b.eb
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 1504, in innertest
template_easyconfig_test(self, spec_path)
File "test/easyconfigs/easyconfigs.py", line 1398, in template_easyconfig_test
self.assertTrue(os.path.isfile(ext_patch_full), msg)
AssertionError: Patch file /home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/d/DeepLabCut/PyTables-3.7.0-fix-libs.patch is available for DeepLabCut-2.2.1.1-foss-2021b.eb
----------------------------------------------------------------------
Ran 15563 tests in 584.378s
FAILED (failures=1, errors=1)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3314858113 Output from first failing test suite run:
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
dep_graph(fn, self.ordered_specs)
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'
======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test/easyconfigs/easyconfigs.py", line 839, in test_dep_versions_per_toolchain_generation
for ec in self.ordered_specs:
File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
EasyConfigTest.resolve_all_dependencies()
File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: wxPython/4.2.0-foss-2021b, PyTorch/1.11.0-foss-2021b, MoviePy/1.0.3-foss-2021b (no easyconfig file or existing module found)'
----------------------------------------------------------------------
Ran 15563 tests in 707.431s
FAILED (errors=3)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/7672113541 Output from first failing test suite run:
FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 933, in test_dep_versions_per_toolchain_generation
self.fail('Should not have multiple variants of dependencies.\n' + multi_dep_vars_msg)
AssertionError: Should not have multiple variants of dependencies.
Found 2 variants of 'glew' dependency in easyconfigs using '2021b' toolchain generation
* version: 2.2.0; versionsuffix: -egl as dep for {'DeepLabCut-2.2.1.1-foss-2021b.eb', 'GRASS-8.2.0-foss-2021b.eb', 'wxPython-4.2.0-foss-2021b.eb', 'QGIS-3.28.1-foss-2021b.eb'}
* version: 2.2.0; versionsuffix: -osmesa as dep for {'Ray-project-1.9.2-foss-2021b.eb', 'mujoco-py-2.1.2.14-foss-2021b.eb', 'OpenAI-Gym-0.21.0-foss-2021b.eb'}
Found 2 variants of 'wxWidgets' dependency in easyconfigs using '2021b' toolchain generation
* version: 3.1.5; versionsuffix: as dep for {'ctffind-4.1.14-foss-2021b.eb'}
* version: 3.2.0; versionsuffix: as dep for {'DeepLabCut-2.2.1.1-foss-2021b.eb', 'GRASS-8.2.0-foss-2021b.eb', 'wxPython-4.2.0-foss-2021b.eb', 'QGIS-3.28.1-foss-2021b.eb'}
----------------------------------------------------------------------
Ran 19018 tests in 727.928s
FAILED (failures=1)
ERROR: Not all tests were successful
bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.
Closed as super-seeded by merged PR https://github.com/easybuilders/easybuild-easyconfigs/pull/19166