{chem}[foss/2021b] yaff v1.6.0 w/ Python 3.9.6

[sassy-crick]

(created using eb --new-pr)

Requires:

• [x] PR #15851

[boegelbot]

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2664870353 Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 325, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: molmod/1.4.8-foss-2021b (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 312, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: molmod/1.4.8-foss-2021b (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 811, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: molmod/1.4.8-foss-2021b (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 15040 tests in 959.920s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01) Please talk to my owner @boegel if you notice you me acting stupid), or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[bedroge]

@boegelbot please test @ generoso

[boegelbot]

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=15854 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_15854 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 8877

Test results coming soon (I hope)...

- notification for comment with ID 1187221319 processed

Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot SUCCESS Build succeeded for 1 out of 1 (1 easyconfigs in total) cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/a9e832b500e408eca48a20c8ba459492 for a full test report.

[boegelbot]

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2690289822 Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 841, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>20(1[89]|[2-9][0-9])[ab]).*\.eb$' easyconfigs:

found 2 variants of 'HDF5' dependency in easyconfigs using '2021b' toolchain generation
* version: 1.10.8; versionsuffix:  as dep for set(['ncbi-vdb-2.11.2-gompi-2021b.eb', 'yaff-1.6.0-foss-2021b.eb', 'shovill-1.1.0-gompi-2021b.eb', 'HISAT2-2.2.1-gompi-2021b.eb', 'SKESA-2.4.0-gompi-2021b_saute.1.3.0_1.eb'])
* version: 1.12.1; versionsuffix:  as dep for set(['SimpleITK-2.1.1.2-foss-2021b.eb', 'CMAverse-20220112-foss-2021b.eb', 'GDAL-3.3.2-foss-2021b.eb', 'DROP-1.1.1-foss-2021b-R-4.1.2.eb', 'ecCodes-2.24.2-iimpi-2021b.eb', 'regionmask-0.9.0-foss-2021b.eb', 'ArviZ-0.11.4-foss-2021b.eb', 'NCO-5.0.3-intel-2021b.eb', 'TensorFlow-2.7.1-foss-2021b.eb', 'OpenAI-Gym-0.21.0-foss-2021b.eb', 'DAS_Tool-1.1.1-foss-2021b-R-4.1.2.eb', 'ESMF-8.2.0-foss-2021b.eb', 'CheMPS2-1.8.11-foss-2021b.eb', 'Fiona-1.8.21-foss-2021b.eb', 'AmberTools-21-intel-2021b.eb', 'inferCNV-1.10.1-foss-2021b-R-4.1.2.eb', 'netCDF-C++4-4.3.1-iimpi-2021b.eb', 'ITK-5.2.1-foss-2021b.eb', 'R-4.1.2-foss-2021b.eb', 'SCopeLoomR-0.13.0-foss-2021b-R-4.1.2.eb', 'vcflib-1.0.3-foss-2021b-R-4.1.2.eb', 'ecCodes-2.24.2-gompi-2021b.eb', 'scanpy-1.8.2-foss-2021b.eb', 'rpy2-3.4.5-foss-2021b.eb', 'h5py-3.6.0-foss-2021b.eb', 'PyMC3-3.11.1-intel-2021b.eb', 'h5py-3.6.0-intel-2021b.eb', 'NCO-5.0.3-foss-2021b.eb', 'slow5tools-0.4.0-gompi-2021b.eb', 'ArviZ-0.11.4-intel-2021b.eb', 'Siesta-4.1.5-foss-2021b.eb', 'loompy-3.0.7-intel-2021b.eb', 'DUBStepR-1.2.0-foss-2021b-R-4.1.2.eb', 'netcdf4-python-1.5.7-intel-2021b.eb', 'Bambi-0.7.1-intel-2021b.eb', 'PyMC3-3.11.1-foss-2021b.eb', 'freebayes-1.3.6-foss-2021b-R-4.1.2.eb', 'Qualimap-2.2.1-foss-2021b-R-4.1.2.eb', 'imgaug-0.4.0-foss-2021b.eb', 'QuantumESPRESSO-6.8-foss-2021b.eb', 'SCGid-0.9b0-foss-2021b.eb', 'IRkernel-1.3-foss-2021b-R-4.2.0.eb', 'SUMO-1.12.0-foss-2021b.eb', 'snippy-4.6.0-foss-2021b-R-4.1.2.eb', 'arrow-R-6.0.0.2-foss-2021b-R-4.2.0.eb', 'FreeBarcodes-3.0.a5-foss-2021b.eb', 'R-bundle-Bioconductor-3.14-foss-2021b-R-4.1.2.eb', 'CDO-1.9.10-iimpi-2021b.eb', 'biom-format-2.1.12-foss-2021b.eb', 'ont-fast5-api-4.0.2-foss-2021b.eb', 'SlamDunk-0.4.3-foss-2021b.eb', 'breseq-0.36.1-foss-2021b.eb', 'ArchR-1.0.1-foss-2021b-R-4.1.2.eb', 'rioxarray-0.11.1-foss-2021b.eb', 'Grace-5.1.25-foss-2021b.eb', 'PPanGGOLiN-1.1.136-foss-2021b.eb', 'CellTypist-1.0.0-foss-2021b.eb', 'rjags-4-12-foss-2021b-R-4.1.2.eb', 'netCDF-4.8.1-gompi-2021b.eb', 'SqueezeMeta-1.5.0-foss-2021b.eb', 'ABINIT-9.6.2-intel-2021b.eb', 'R-bundle-Bioconductor-3.15-foss-2021b-R-4.2.0.eb', 'ParaView-5.9.1-foss-2021b-mpi.eb', 'CmdStanR-0.5.0-foss-2021b-R-4.1.2.eb', 'geopandas-0.11.0-foss-2021b.eb', 'presto-1.0.0-20200718-foss-2021b-R-4.1.2.eb', 'netcdf4-python-1.5.7-foss-2021b.eb', 'mapDamage-2.2.1-foss-2021b.eb', 'tMAE-1.0.1-foss-2021b-R-4.1.2.eb', 'kallisto-0.48.0-gompi-2021b.eb', 'OpenCV-4.5.5-foss-2021b-contrib.eb', 'Trycycler-0.5.3-foss-2021b.eb', 'netCDF-4.8.1-iimpi-2021b.eb', 'Albumentations-1.1.0-foss-2021b.eb', 'OpenFOAM-v2112-foss-2021b.eb', 'STRique-0.4.2-foss-2021b.eb', 'loompy-3.0.7-foss-2021b.eb', 'AMPtk-1.5.4-foss-2021b.eb', 'PyTables-3.6.1-foss-2021b.eb', 'netCDF-Fortran-4.5.3-gompi-2021b.eb', 'scPred-1.9.2-foss-2021b-R-4.1.2.eb', 'netCDF-Fortran-4.5.3-iimpi-2021b.eb', 'ncview-2.1.8-gompi-2021b.eb', 'rasterio-1.2.10-foss-2021b.eb', 'arrow-R-6.0.0.2-foss-2021b-R-4.1.2.eb', 'Ray-project-1.9.2-foss-2021b.eb', 'Bambi-0.7.1-foss-2021b.eb', 'netCDF-C++4-4.3.1-gompi-2021b.eb', 'OpenSceneGraph-3.6.5-foss-2021b.eb', 'R-4.2.0-foss-2021b.eb', 'TensorFlow-2.7.1-foss-2021b-CUDA-11.4.1.eb', 'ESMF-8.2.0-intel-2021b.eb'])


----------------------------------------------------------------------
Ran 15055 tests in 783.299s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01) Please talk to my owner @boegel if you notice you me acting stupid), or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[boegel]

closing this, since the PR it was required for (#15869) is also closed...