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{math}[GCCcore/9.3.0] CPLEX v12.10 w/ Python 3.8.2

Open Falkor opened this issue 2 years ago • 3 comments

(created using eb --new-pr)

Falkor avatar Apr 05 '22 20:04 Falkor

@Falkor: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2098697570 Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 830, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>GCCcore-([7-9]|[1-9][0-9])\.[0-9]).*\.eb$' easyconfigs:

found 2 variants of 'Java' dependency in easyconfigs using 'GCCcore-9.3' toolchain generation
* version: 1.8; versionsuffix:  as dep for set(['CPLEX-12.10-GCCcore-9.3.0-Python-3.8.2.eb', 'GATK-4.1.5.0-GCCcore-9.3.0-Java-1.8.eb', 'GATK-4.1.8.1-GCCcore-9.3.0-Java-1.8.eb', 'Bazel-0.29.1-GCCcore-9.3.0-Java-1.8.eb'])
* version: 11; versionsuffix:  as dep for set(['Graphviz-2.44.1-GCCcore-9.3.0-Java-11-Python-3.8.2.eb', 'canu-2.1.1-GCCcore-9.3.0-Java-11.eb', 'ANTLR-2.7.7-GCCcore-9.3.0-Java-11.eb', 'GATK-4.1.5.0-GCCcore-9.3.0-Java-11.eb', 'NGS-2.10.5-GCCcore-9.3.0.eb', 'DFA-0.3.4-GCCcore-9.3.0-Python-3.8.2.eb', 'pydot-1.4.1-GCCcore-9.3.0.eb', 'Bazel-3.6.0-GCCcore-9.3.0.eb', 'Trim_Galore-0.6.6-GCCcore-9.3.0-Python-3.8.2.eb', 'Graphviz-2.44.1-GCCcore-9.3.0-Java-11.eb', 'py-aiger-6.1.1-GCCcore-9.3.0-Python-3.8.2.eb'])


----------------------------------------------------------------------
Ran 14473 tests in 662.773s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01) Please talk to my owner @boegel if you notice you me acting stupid), or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegelbot avatar Apr 05 '22 21:04 boegelbot

Not sure how to deal with the meta-java deps error... suggestions welcome

Falkor avatar Apr 06 '22 09:04 Falkor

@Falkor: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2101314773 Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 830, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>GCCcore-([7-9]|[1-9][0-9])\.[0-9]).*\.eb$' easyconfigs:

found 2 variants of 'Java' dependency in easyconfigs using 'GCCcore-9.3' toolchain generation
* version: 1.8; versionsuffix:  as dep for set(['CPLEX-12.10-GCCcore-9.3.0-Python-3.8.2.eb', 'GATK-4.1.5.0-GCCcore-9.3.0-Java-1.8.eb', 'GATK-4.1.8.1-GCCcore-9.3.0-Java-1.8.eb', 'Bazel-0.29.1-GCCcore-9.3.0-Java-1.8.eb'])
* version: 11; versionsuffix:  as dep for set(['Graphviz-2.44.1-GCCcore-9.3.0-Java-11-Python-3.8.2.eb', 'canu-2.1.1-GCCcore-9.3.0-Java-11.eb', 'ANTLR-2.7.7-GCCcore-9.3.0-Java-11.eb', 'GATK-4.1.5.0-GCCcore-9.3.0-Java-11.eb', 'NGS-2.10.5-GCCcore-9.3.0.eb', 'DFA-0.3.4-GCCcore-9.3.0-Python-3.8.2.eb', 'pydot-1.4.1-GCCcore-9.3.0.eb', 'Bazel-3.6.0-GCCcore-9.3.0.eb', 'Trim_Galore-0.6.6-GCCcore-9.3.0-Python-3.8.2.eb', 'Graphviz-2.44.1-GCCcore-9.3.0-Java-11.eb', 'py-aiger-6.1.1-GCCcore-9.3.0-Python-3.8.2.eb'])


----------------------------------------------------------------------
Ran 14473 tests in 567.233s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01) Please talk to my owner @boegel if you notice you me acting stupid), or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegelbot avatar Apr 06 '22 09:04 boegelbot

closing this since GCCcore/9.3.0 is deprecated, see https://docs.easybuild.io/policies/toolchains

boegel avatar Jan 14 '24 08:01 boegel