easybuild-easyblocks

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enhance Geant4 easyblock: add support for optional build options

1

(created using `eb --new-pr`)

jfgrimm

set cairo as default bitmaptype in etc/Rprofile.site

3

as EB has cairo as a build dep, it might make sense to set cairo as a site default in `EBROOT/lib64/R/etc/Rprofile.site` by creating that file and adding `options(bitmapType = 'cairo')`...

stdweird

install and load RPATH wrappers in GCCcore module (WIP)

3

WIP PR to install RPATH wrappers together with GCCcore and loading them automatically when loading the module. This would make GCC in an RPATH stack transparent to a user, if...

stderr-enst

TensorFlow tests may require to be run on an even number of cores.

13

When doing a CPU-only build of TF 2.6.0 in a batch job with 7 cores it repeatedly failed //tensorflow/python/data/kernel_tests:interleave_test When running it on 14 cores the test passed. I haven't...

akesandgren

sitecustomize.py related crash when rebuilding Python

2

When adding a single extension to an older `Python` module I saw this error with EB `4.4.2`: ``` == 2021-09-13 13:27:18,911 filetools.py:1783 INFO Creating directory /tmp/eb-iZ3Wvx/tmpufWW9M-tmp-prefix/lib/python3.7/site-packages (parents: True, set_gid: False,...

verdurin

CUDA enabled torchvision silently broken builds if not built from a host with a physical GPU.

1

It still links to all the CUDA libraries, so at a glance it doesn't look obviously broken. But, apparently a vital CUDA backend for torchvision::nms is missing. The following code...

Micket

patch Java binaries/libraries when using alternate sysroot to ensure correct glibc & co are picked up + add custom sanity check (WIP)

3

Enhancement for custom easyblock for Java to fix problems that occur when using `Java` in the context of an alternate sysroot and using RPATH (see https://github.com/EESSI/software-layer/issues/123) Also adds basic custom...

boegel

FortranPythonPackage ignores use_pip

12

E.g. EB_scipy uses FortranPythonPackage which ignores `use_pip` and always builds with setup.py It then uses pip to build the package again (this time without the Fortran settings) and installs that....

Flamefire

Hi, we needed to provide a fix for the MATLAB easyblock `matlab.py` since LooseVersion seems to be stricter with Python3. The fix was copied from [a similar issue](https://github.com/easybuilders/easybuild-easyblocks/issues/1792): ``` #...

lucamar

Including FlexiBLAS as the default BLAS in foss will require easyblock changes

5

A first search indicates (at least): - [CMakeMake](https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/generic/cmakemake.py) (see issue #2420) - ~[numpy](https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/n/numpy.py)~ (no change needed to link with FlexiBLAS, cfr. https://github.com/easybuilders/easybuild-easyconfigs/pull/12935) - [SuperLU](https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/s/superlu.py) - ~[ScaLAPACK](https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/s/scalapack.py)~ (fixed in ~#2427~) -...

ocaisa