earlEBI

@sajo-ebi Could I please get an export of the publications in Depocuration Sandbox for me to check? And the date the sync was done.

@sajo-ebi I've requested access.

All publications that were added to the Curation queue before the 28th March are in Depocuration Sandbox. I cannot check that the statuses match, however, unless there is a sandbox-depocuration...

All publications with 'level 1 curation done' status in curation db before 28th March are in the spreadsheet provided (except for one which was manually changed so is ok.)

@karatugo There are still several GCSTs on public without yamls, eg: http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90428001-GCST90429000/GCST90428117/ http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90428001-GCST90429000/GCST90428431/ These are from separate submissions, 1 is published, the other is not. This is not an exhaustive...

Ok, so, say, once a week, all the sumstats released in the previous week will have yamls generated in one go?

@karatugo ok I think I understand, thanks.

@karatugo Sample info and ontology mapping are missing for http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST003001-GCST004000/GCST003898/ Ontology mapping is missing for http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90427001-GCST90428000/GCST90428000/ , etc.

@ljwh2 That makes sense. I assumed the field just wouldn't exist for pre-pub submissions but if it's supposed to just appear empty, that's okay. The sample is still empty for...

I've reuploaded the template but I can't see analysis_software field in Mongo or Oracle db... Could someone else check this field now exists?