Etienne Sollier

Only interchromosomal SVs used for chr_breakpoint_enrichment and pval_exp_chr ?

4

Hello, I want to use ShatterSeek, and I tried testing it on a sample which seems (based on visual inspection) to have a chromothripsis event on chromosome 3. In the...

Take n_bins into account for the cell_ranger flavor of highly_variable_genes

1

I've changed one line in the highly_variable_genes function, so that n_bins is taken into account with the cell_ranger flavor (currently only the seurat flavor uses this parameter). Additionally, I have...