FilFinder
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e-koch
Detection of filamentary structure in molecular clouds
Hello, thank you for this great package Is there a way to identify the pixels of branches that contain an endpoint? best valerian
I am simply trying to reproduce the results of the example script in the FilFinder Tutorial and it gets stuck at: fil.create_mask(verbose=True, border_masking=False, size_thresh=400 * u.pix**2, glob_thresh=0.0267) The error is:...
When running the example script in the example folder, I got the following error: n [2]: run example_filament_profile.py --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) /usr/local/lib/python3.9/site-packages/FilFinder/examples/example_filament_profile.py in 45 # p.ion()...
I'm trying to find the width information on filaments, other methods were ok, but no matter what, find_widths() gives error. ``` # there is a skeleton length reading package from...
AssertionError: Sliced image shape does not equal the mask shape. This should never happen! If you see this issue, please report it as a bug! ``` fil = FilFinder2D(thresh, mask=thresh,...
Beginning work on 3D filaments. - FilFinder3D.py - Houses the FilFinder3D class object with functions. - test_graph.py - Houses a Networkx.Graph() object to be used for test cases. Also runs...
There are 2 kinds of problems with looped filaments introduced in filfinder2D: 1. Looped filament without any end gives: UnboundLocalError: local variable 'max_path_length' referenced before assignment; 2. Looped filament with...
It's not straightforward to return a single filament back into the original image shape. A convenience function of the following would be good to add (`fil` is a `FilFinder2D` instance):...
Add docs page on scaling a test image with the same number of filaments to larger sizes.
Some properties in FilFinder2D are not described in the docs (i.e. `FilFinder2D.skeleton_longpath`).