ggtranscript
ggtranscript copied to clipboard
dzhang32
Visualizing transcript structure and annotation using ggplot2
Given just how much information can be gleaned from these plots it would be incredibly useful if plots could be interactive (to allow for zooming, moving along a transcript structure,...
Thank you for this excellent work - I have been looking for something like this for a while as I often needed to explore transcript assemblies within a gene or...
I realize this involves some complex design/implementation changes and it is a feature more suitable for a full genome browser which is not the goal of this package. For cases...
The `to_diff()` function is great for showing differences between exons, but sometimes it is very useful to highlight differences between introns and individual splice sites. Not sure if it wouldn't...
Hi, Firstly, thanks for this R package; it's already really useful to me, and it's quite user friendly :) However, I'm having an issue with the geom_junction_label_repel 'geom' and getting...
Is there a way to create a plot with shortened gaps that still shows exon vs CDS regions?
Hi, Is there an easy way to inverse the orientation for transcripts that are on the minus strand (to also go from left to right)? Kind regards, Tabea
Hi, this is not an issue, just a report about a change in ggplot2 affecting your package. Best, Nicco ```R # devtools::install_github("dzhang32/ggtranscript") library(dplyr) library(ggplot2) library(ggtranscript) ``` Running the first example...
Is there a way to add a read coverage track above (or below) the transcripts? Either from a bigwig or bam file?
