oases
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dzerbino
De novo transcriptome assembler for short reads
Hi, I have a question regarding the velvetg command, I don't know what to provide in the "ins_length" and "–min_trans_lgth" parameters. This is not straight forward from the manual or...
I am running oases version `0.2.09` installed from bioconda. When I run `oases --help`, then I get the usage message below, which includes documentation for `-ins_length2`, but not for `-ins_length`....
Hello everybody, I'm currently testing Oases on our RNA-Seq data (approx. 40 – 80 million paired–end Illumina reads with 150 bp length) and for some reason velvetg tries to allocate...
Hi I am sure i have set velvet in my path "Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 127" and then i found the oase Compilation settings: CATEGORIES = 2...
I'm running oasis-velvet on a dataset of single-end 50bp data and its crashing for me with a glibc error. I could really use some help figuring out how fix/get round...
Progress as been made since issue #8 : A/ Shuffling the order of the sequences in the input file clearly give rise to different Oases outputs, which is a bit...
Hi, Following command works perfectly fine, but the one after runs in to errors: python /production/velvet/1.2.10/oases-master/scripts/oases_pipeline.py -d '-fastq.gz -separate -shortPaired ../SS-49_1.fastq.gz ../SS-49_2.fastq.gz' -m 21 -M 99 -s 2 -o SS-49_H7M3LBCXX_2_AAGGACAC_unstranded...
