Dylan Kotliar

This should be addressed now as per issue #71. Sorry for being slow to get to this. Let me know if there are ongoing issues.

Hi, sorry this isn't an easy thing to address in the current implementation and it is something I will think about adding in the future. This is what I have...

Hi, sorry for slow reply. Can you copy your full consensus command? Does the problem persist if you use ```density_threshold=0.15``` which seems more appropriate based on the histogram? My guess...

Hi, sorry I know its probably no longer helpful but this is the subject of [our recent preprint](https://www.biorxiv.org/content/10.1101/2024.05.03.592310v1).

Adjusted in the latest development branch and will push to master and pypi shortly. Thanks again

Hi Diego, currently top_genes is created on the fly with the ```cnmf_obj.load_results()``` function in the Python environment and isn't created in any of the functions run from the command line....

Yes, hopefully I'll get to this soon. In the mean time, the python code to get this is below and I asked chatgpt to convert to R and it gave...

Any update on python-3.3 compatibility? Thanks!

Sorry for the slow response I gave it a try and made few superficial changes (print statements, some import statements, and a try/except statement) and so now: ``` from cruzdb...

Hi Jason, If there are strong batch signals within the individual samples, that might cause the programs to correlate less well across samples. In that case, there can sometimes be...