The nmf running error on python3.7.13 version

[honghh2018]

Hi guys, When i running the cnmf， the error showing up lying below:

ValueError: Distance matrix 'X' must be symmetric.

miniconda environment python 3.7.13

Best

[dylkot]

Sorry for the slow reply! Could you provide the complete trace? That likely suggests there is an issue with the clustering in the consensus step?

[honghh2018]

sorry for this lately reply Yes, it was consensus

/share/apps/miniconda3-py39/envs/cNMF-python/lib/python3.7/site-packages/cnmf/cnmf.py:56: RuntimeWarning: invalid value encountered in sqrt D = np.sqrt(D) Traceback (most recent call last): File "/share/apps/miniconda3-py39/envs/cNMF-python/bin/cnmf", line 8, in sys.exit(main()) File "/share/apps/miniconda3-py39/envs/cNMF-python/lib/python3.7/site-packages/cnmf/cnmf.py", line 949, in main close_clustergram_fig=True) File "/share/apps/miniconda3-py39/envs/cNMF-python/lib/python3.7/site-packages/cnmf/cnmf.py", line 755, in consensus cl_dist = squareform(topics_dist[cl_filter, :][:, cl_filter]) File "/share/apps/miniconda3-py39/envs/cNMF-python/lib/python3.7/site-packages/scipy/spatial/distance.py", line 2184, in squareform is_valid_dm(X, throw=True, name='X') File "/share/apps/miniconda3-py39/envs/cNMF-python/lib/python3.7/site-packages/scipy/spatial/distance.py", line 2260, in is_valid_dm 'symmetric.') % name) ValueError: Distance matrix 'X' must be symmetric. Best, hanhuihong