Daniel Weindl
Daniel Weindl
Hi @MaAl13, when using multiprocessing (directly or indirectly as here through `SacessOptimizer`), always protect your module-level code with `if __name__ == '__main__':` as suggested in the error message above. I.e.,...
That's now the problem @FFroehlich was referring to. I am not sufficiently familiar with Jax to help there.
Thanks, Frank. I don't see `writeMathMLToStdString` in the Python library, though (`AttributeError: module 'libsbml' has no attribute 'writeMathMLToStdString'`).
> the other leak is probably an issue with SWIG? Yes, I think `%newobject writeMathMLWithNamespaceToString;` is missing below https://github.com/sbmlteam/libsbml/blob/31a6ce30cd484fbb8470cb9779c5092a92aa0ddb/src/bindings/swig/libsbml.i#L396.
> But it looks like we don't expose it to the python bindings. Yup, `#ifndef SWIG`: https://github.com/sbmlteam/libsbml/blob/31a6ce30cd484fbb8470cb9779c5092a92aa0ddb/src/sbml/math/MathML.h#L87-L102
> This could be resolved by using the same `sensi_orders` in all function calls, or otherwise providing some way for the user to specify this. It might make sense to...
I think, before working on this, we'll need to discuss the desired ensemble functionality in pypesto. The current ensemble prediction setup is 100% tailored to AMICI https://github.com/ICB-DCM/pyPESTO/blob/82b7d5da1273b9d442a634e5aabbda9685279d77/pypesto/result/predict.py#L113-L115 https://github.com/ICB-DCM/pyPESTO/blob/82b7d5da1273b9d442a634e5aabbda9685279d77/pypesto/result/predict.py#L28-L34 Can we...
@PaulJonasJost : Are you still working on that?
@Doresic : This is finished, right?
Ah, right. Thanks for the update.