9 tests fail in 0.2.11

[yurivict]

Description

=============================================================================================== FAILURES ================================================================================================
_______________________________________________________________________________________ TestFindEmb.test_default ________________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_default>

    def test_default(self):
        """
        Minimal find_embedding call
        """
        # Test a dnx_graph
>       mml.find_embedding(self.S, self.C)

layout/test_find_embedding.py:33: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x8e1647d30>, T = <networkx.classes.graph.Graph object at 0x8e16476a0>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
____________________________________________________________________________________ TestFindEmb.test_layout_kwargs _____________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_layout_kwargs>

    def test_layout_kwargs(self):
        """
        Pass in layout kwargs.
        """
        # Pick some values to pass in
        dim = 3
        center = (0, 0, 0)
        scale = 2
    
>       _, (S_layout, C_layout) = mml.find_embedding(self.S, self.C,
                                                     dim=dim, center=center, scale=scale, return_layouts=True)

layout/test_find_embedding.py:77: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9bd757f40>, T = <networkx.classes.graph.Graph object at 0x9bd757220>, layout = (<function p_norm at 0x8e1644ee0>, None)
layout_kwargs = {'center': (0, 0, 0), 'dim': 3, 'scale': 2}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
___________________________________________________________________________________ TestFindEmb.test_layout_parameter ___________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_layout_parameter>

    def test_layout_parameter(self):
        """
        It can be a function or a 2-tuple of various things.
        """
        # A function
>       mml.find_embedding(self.S, self.C, layout=nx.circular_layout)

layout/test_find_embedding.py:119: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x952b6d730>, T = <networkx.classes.graph.Graph object at 0x952b6d6d0>, layout = <function circular_layout at 0x87ab0a430>, layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
___________________________________________________________________________________ TestFindEmb.test_layout_returning ___________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_layout_returning>

    def test_layout_returning(self):
        """
        Layouts can be returned.
        """
>       _, (S_layout, C_layout) = mml.find_embedding(
            self.S, self.C, return_layouts=True)

layout/test_find_embedding.py:63: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9604bef70>, T = <networkx.classes.graph.Graph object at 0x9604bea30>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
_______________________________________________________________________________________ TestFindEmb.test_mm_hints _______________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_mm_hints>

    def test_mm_hints(self):
        """
        Different types of mm.find_embedding hinting.
        """
>       mml.find_embedding(self.S, self.C, mm_hint_type="initial_chains")

layout/test_find_embedding.py:53: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9b06d2280>, T = <networkx.classes.graph.Graph object at 0x9b06d2490>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
__________________________________________________________________________________ TestFindEmb.test_placement_closest ___________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_placement_closest>

    def test_placement_closest(self):
        """
        Test the closest placement strategy
        """
        # Pick some values to pass in
        subset_size = (1, 2)
        num_neighbors = 5
    
>       mml.find_embedding(self.S, self.C, placement=mml.closest,
                           subset_size=subset_size, num_neighbors=num_neighbors)

layout/test_find_embedding.py:105: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9d84b6b50>, T = <networkx.classes.graph.Graph object at 0x9d84b6850>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
________________________________________________________________________________ TestFindEmb.test_placement_interesction ________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_placement_interesction>

    def test_placement_interesction(self):
        """
        Test the intersection placement strategy
        """
>       mml.find_embedding(self.S, self.C, placement=mml.intersection)

layout/test_find_embedding.py:112: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9b06d2b50>, T = <networkx.classes.graph.Graph object at 0x9d5520dc0>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
___________________________________________________________________________________ TestFindEmb.test_placement_kwargs ___________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_placement_kwargs>

    def test_placement_kwargs(self):
        """
        Pass in placement kwargs.
        """
        # Pick some values to pass in
        scale_ratio = .8
    
>       mml.find_embedding(self.S, self.C, scale_ratio=scale_ratio)

layout/test_find_embedding.py:95: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0x9d84b6c40>, T = <networkx.classes.graph.Graph object at 0x9d84b7760>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
_______________________________________________________________________________________ TestFindEmb.test_timeout ________________________________________________________________________________________

self = <layout.test_find_embedding.TestFindEmb testMethod=test_timeout>

    def test_timeout(self):
        """
        Test the timeout parameter
        """
        # Subtract time from layout and placement and give it to mm.find_embedding
>       mml.find_embedding(self.S, self.C, timeout=10)

layout/test_find_embedding.py:43: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:93: in find_embedding
    S_layout, T_layout = _parse_layout_parameter(S, T, layout, layout_kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

S = <networkx.classes.graph.Graph object at 0xb5375a070>, T = <networkx.classes.graph.Graph object at 0xb5375a250>, layout = (<function p_norm at 0x8e1644ee0>, None), layout_kwargs = {}

    def _parse_layout_parameter(S, T, layout, layout_kwargs):
        """Determine what combination of iterable, dict, and function the layout
        parameter is.
        """
>       if nx.utils.iterable(layout):
E       AttributeError: module 'networkx.utils' has no attribute 'iterable'

../../stage/usr/local/lib/python3.9/site-packages/minorminer/layout/__init__.py:154: AttributeError
=========================================================================================== warnings summary ============================================================================================
../../stage/usr/local/lib/python3.9/site-packages/minorminer/utils/polynomialembedder.py:60
  /usr/ports/math/py-minorminer/work-py39/stage/usr/local/lib/python3.9/site-packages/minorminer/utils/polynomialembedder.py:60: DeprecationWarning: minorminer.utils.polynomialembedder is deprecated. Use minorminer.busclique intead.
    warnings.warn("minorminer.utils.polynomialembedder is deprecated. Use minorminer.busclique intead.", DeprecationWarning)

tests/layout/test_layout.py::TestLayout::test_pnorm
  /usr/local/lib/python3.9/site-packages/numpy/linalg/linalg.py:2551: RuntimeWarning: invalid value encountered in reciprocal
    ret **= reciprocal(ord, dtype=ret.dtype)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= 9 failed, 153 passed, 2 warnings in 427.28s (0:07:07) =========================================================================
*** Error code 1

To Reproduce Regular build/test.

Environment:

• OS: FreeBSD 13.1
• Python version: 3.9

[boothby]

Thanks, this is due to an incompatible networkx version. I'm working on expanding our support window today.