Tom

Phase

9

Dear author I would like to consult where the color is inconsistent in the picture, (the changing contig),What is the generating file that lets me know which contig it is?...

Dear author I want to see the results of the genome itself alignment I used this code: minimap2 -cx asm5 -t 100 -I8g $ref.fa $ref.fa > $ref.paf However . this...

BWA BAM

3

dear author /bwa mem -t 80 MotherHap.fa R1.fastq.gz R2.fastq.gz |samtools view -@ 70 -Sb > F0-73.bam samtools sort -@ 60 F0-73.bam -o F0-73.sort.bam samtools index F0-73.sort.bam Then I went to...

Dear author How to solve this Problem？ Does it require networking to accomplish? Best HuipengDu

meryl-lookup -include

1

 This is the parameter index provided by the author, but why is it not included in the meryl-lookup?  Hope for some guidance

use meryl

1

Dear author meryl if there are parameters, can retrieve the reads where the kmer is located

SD--tsv

4

Dear author I'd like to ask you,I run through your code ,generates 3 tsv suffix files,as follow:  I'd like to ask which file I should mainly look at. What...

Dear author I used the commands recommended by githup, as follows： megalodon \ $f5 \ --guppy-server-path $guppy \ --guppy-config dna_r9.4.1_450bps_fast.cfg \ --remora-modified-bases dna_r9.4.1_e8 fast 0.0.0 5hmc_5mc CG 0 \ --outputs...