Mathieu Dubois

Results 38 comments of Mathieu Dubois

Don't use sphinx==5.3.0 in examples

#10939 is ready for review/comments.

Docs: update reproducible builds guide

I finished the main proposed modifications. However, I don't understand the "✅ Good:" badge in **Pin your transitive dependencies**. Any thoughts ?

Docs: update reproducible builds guide

Sorry for the delay. I commented on the various points you raised and modified the code.

Docs: update reproducible builds guide

Any news ?

Can PlaScope work based on the assembly sequence from other soft?

@jpaganini I have a few comments on the code (see the PR).

Can PlaScope work based on the assembly sequence from other soft?

#4 has been merged. So I guess that the answer to this issue is "yes, at least with `unicycler`".

Combining PlaScope with gplas

Hello, Thanks for you contributions. I think this option would be useful. @GuilhemRoyer, any opinion ? I will review your PR soon. Mathieu

TypeError: object.__new__(BlockManager) is not safe, use BlockManager.__new__()

I have the same issue when installing with `pip`. I think it's related to recent versions of pandas (I have no issue when I use pandas 1.2.0). If I'm correct,...

Reorganize code and don't use require_relative in exec_annotation

Any thoughts ?

cupy.is_available() raises CUDARuntimeError

Hello, I recently faced a similar issue using Google Colab (see googlecolab/colabtools#5166) and we came to the same conclusion. Note that @metrizable dug into the code and found the explanation....