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An example config of each type
Instead of one mish-mash example config, the example/config directory should have one example config for each of the three major types of problems. This would complement dirtyduck, allow for better explanatory text about why each option is used or choice is made for different purposes, and make it easier for people to get started using a sample config.
This may happen with the upcoming event of DirtyDuck being merged into the Triage repo (e.g. #427 and #428). My vision for how we would integrate DD is that all of those DD configs would rend up in the same directory as the one we have right now. And we have EIS/Inspections from that already, although I'm guessing we would have to add a visit-level one.
At that point, we may even remove the config file we have now. The comments in it are valuable, though we may want to transfer them to the DD config files (with improvements, as you say), or even a documentation site page instead of an 'example config'.