Douglas Senalik

I did pull #1585 so that I could use that for the newick loader form 😁

@risharde the newick loader branch is now functional and can load trees. I will need to test more thoroughly and work out any bugs

1. The problem with editing the gene we also noted in issue #1810 It is a problem with the sequence coordinates field. This is being worked on also in issue...

I have another version of this test file to see if we can load a gene sequence from the FASTA section. [PAU8-withgeneseq.txt](https://github.com/tripal/tripal/files/14792698/PAU8-withgeneseq.txt) There is a bug, but I will have...

@SalihaZ can you provide the gff3 file that causes the problem with publishing failing, so we can figure out what is causing that?

Those files loaded and published fine for me. What versions of Drupal and PHP do you have? Are you using a "traditional install" or a docker? Can you check the...

Thanks for the error message. From the `referer` at the end, it looks like this error was from adding a Drupal node, not from running the gff importer, but of...

Let's try to turn on debugging. You will need to go to Tripal -> Page Structure (This is at `/admin/structure/bio_data` ) For Organism (or any content type will work) under...

Interesting. the `dpm()` function is defined by the devel module, which maybe you don't have installed. Go to `/admin/modules` and make sure devel is enabled 

I agree that the constraint on Analysis is odd and confusing. It is actually the combination of three values: `program + programversion + sourcename` This is not defined by Tripal,...