Douglas Senalik

icon indicating a website link http://www.vcru.wisc.edu/simonlab/sdata/software/index.html icon indicating an email [email protected]

icon company USDA ARS VCRU at University of Wisconsin - Madison icon location Madison WI USA

Results 126 comments of Douglas Senalik

IDSpace and Vocabularies -- Outstanding Items

I noticed this comment, I had reason to remove a module (BIMS, didn't support chado 1.3) and it took me some time to clean up the CV and DB entries,...

OBO Importer: Cannot find term: 'NCIT:C25693' when importing into 2nd chado schema

From a code review of `OBOImporter.php` it looks like we will only need to provide: * NCIT:C25693 * rdfs:comment * a DB named 'synonym_type' * a CV named 'synonym_type'

Tripal 4 Pub Importer

My working notes about the files for this importer ## INSTALLATION FILE: `tripal/tripal.install` 🠚 define the new table `tripal_pub_import` ## MENU ITEMS ### JOB RUNNER FILE: `tripal_chado/src/Plugin/TripalImporter/ChadoPubImporter.php` 🠚 Plugin for...

Tripal 4 Pub Importer

New design for the publication loader - see https://github.com/tripal/tripal/issues/1595#issuecomment-1677701789 > Summary of discussion on 8/14/2023 in the Tripal Dev file > > For publications > - Create a base class...

Better Debugging of ChadoStorage for Field Development

Closing as this was nicely done with merged PR #1604

type_id for all linker tables

This sounds like a great improvement, especially since it is backwards compatible. I would prefer consistency in all of the linker tables. A few linker tables also have a `rank`...