caught segfault, address cause 'invalid permissions'

[awaisfarooq724]

CDS file could not be read properly, Please make sure the file contains only CDS sequences and is in fasta format.

I have check the filed is in CDS sequence.

BolC010000010-mRNA-1 ATGAAAAGCGGGATAATGTCGTTAATCTTTGCGCTCTATTTAACCGTTATGGTTGTTACAGCGAATAGCG ATTCCAACTACTACGGGACGACCAAGCCGGTTCATCTGAAGGAGGAGAAAGTGACACGTCTCCACTTCTA CCTTCATGATATCCTCAGTGGCAGAAACCCCAGCGCCGTCAGAATCGCACACGCCAATCTCACCGGCGGC GCAGATTCGGCAGTAGGATTCGGAAGCCTGTTCGCGATGGACGATCCGCTCACCGTCGGACCCGGGAAAG ATTCGAAGGAGATAGGAAACGGGCGTGGAATGTACGTATCCGGGAGCAAAGACATAAGAAAGTTCACGAT CGTGATGTACGCGGATTTGGCGTTCACGACGGGGAAATTCAACGGAAGCTCGATAAGCGTGTTCTCGAGG AATCCGGTGGCGGAAGAGGCCGGAGAGAGAGAGATTGGGATCGTGGGAGGACGTGGTAAATTCAGAATGG CTAGAGGCTTCGTCAATATCAAAACGCATCAGATCGACATGAAGACAGGCGATGCTGTTCTCCGTTACGA TGCTACTGTTTACCATTATTAA BolC010000020-mRNA-1 ATGAGGATCTTACCCGAGCCTCTAGGTTCGGTTCCATGCCTCATTCTCCTCGTGTCGTCGGTTCTATTTT CAGCGACTCTATCCCTCGCTCGTGTCGTCGAAGTTGTTGGTTACGCCGAGAGCAAAATCAAAAATCCCCA TGCATTCACAGGACTCCGAGTGACGATTGAATGTAAGGGGGAGAAAGGGCATTTTGTTACAAAAGGTTCT GGAAACATTGATGAGGAAGGAAAGTTCGGTCTGAAAGTTCTTCCTCATGACATTATCTCTGACGACGGAG CCTTAAAGGAGGAGTGTTATGCCCAGCTTCACAGTGCGGCGGGAGCACCTTGTCCGGCTCACGACGGCCT TGAGTCAAACAAGATCGTGTTTCTATACACATCCGGAGACAAACACGTTTTGGGCCTCAAACAAAACCTG

this is my CDS file. is there something that is wrong with my file?

my commands is here;

dNdS(query_file = '/home/data1/bai/Aw/parents/Bra.cds', subject_file = '/home/data1/bai/Aw/parents/BOL.cds', delete_corrupt_cds = TRUE ortho_detection = "RBH", aa_aln_type = "pairwise", aa_aln_tool = "NW", codon_aln_tool = "pal2nal", dnds_est.method = "Comeron", comp_cores = 1 )

[HajkD]

Hi,

It seems like you don't have read/write permission on the machine you are running your code. Could this be the case?

Cheers, Hajk