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[New Feature Needed]T7 Promoter Exclusion in AptaCluster

2

It seems that in AptaCluster, you are performing clustering with the entire DNA sequences. In RNA aptamers, the DNA sequences contains T7 promoter which will not appear in RNA aptamer...

Eggsorer

Currently, we use the default parameters of RNAFold for folding. Adding the possibility to configure these, would allow for a more fine graded structure analysis.

drivenbyentropy

Possibility to add new selection rounds to an experiment

1

A possible enhancement - it would be great if you could add/delete rounds from the selection experiment which is already parsed. Of course it would require some re-parsing of the...

PJpb

Add support for FASTA format

2

drivenbyentropy

Crashes when Importing Data

4

Hi, I downloaded v09.8, but every time I try to import my data, the program crashes. I have tried to redownload the program but it still doesn't work. Any suggestions?

ahkoep

Hi, I am trying to analyze my data with aptasuite but it keeps crashing when it came to import data. I stored my aptasuite and FASTQ files in my internal...

Hiba-Gafar

## AptaCluster GUI: Seems like when the Aptamer ID of the seed sequence is too large, AptaTRACE GUI won't find the seed sequence ( may usually display in the first...

YouthSociety

Counter and control selection parameters

1

Hi! To carry out the analyses we are working on with APTASUITE, we would need some more information about the following options that can be used in the configuration file:...

Jimaz

I've used AptaTrace before but in v0.9.8 it doesn't return motifs for me. Any suggestions?

captamer23

Bumps [json](https://github.com/douglascrockford/JSON-java) from 20180130 to 20230227. Release notes Sourced from json's releases. 20230227 Pull Request Description #723 Protect JSONML from stack overflow exceptions caused by recursion #720 Limit the XML...

dependabot[bot]