How to parse with only the 5' primer and random region size: command line

[kep93943]

How do you properly write the configuration file to use the 5' primer and the random region size on the command line? What I tried is:

"#" OPTIONAL, if not specified, we need Experiment.randomizedRegionSize "#" Experiment.primer3 = Experiment.randomizedRegionSize = 40 (no actual quotations used, I just didn't know how to type it here without making it a "header")

This resulted in it not processing any of the reads and not exporting anything.

Ultimately, I want to be able to parse and export the cycle files on the cluster with only the random regions of length 40.

Thank you