Benjamin T. Vincent

Propose making mediation and moderation notebooks more causal

2

I propose moving the Bayesian mediation analysis and Bayesian moderation analysis notebooks from the Case Studies section to the Causal Inference section of the docs. Both notebooks would be heavily...

Improve visuals of the notebook gallery

7

The gallery is great, but there is definitely room for improvement. This is particularly noticeable since the core notebooks were added to the top of the page. The thumbnails are...

update `requirements-write.txt`

1

The current requirements file is out of date and potentially too minimal https://github.com/pymc-devs/pymc-examples/blob/dce63a03b894d39a0a39a4773f9a0226078391c1/requirements-write.txt#L1-L9 # Todo - [ ] Replace `pymc3` with `pymc`, possibly with a `>=4.0` version tag. - [...

#2313 outlined a bug when using `plot_forest`. In that issue @OriolAbril proposed a fix. This PR implements this 1 line fix. Previously I was also running into this bug, but...

`InferenceData.to_dataframe()` can crash the kernel

1

**Describe the bug** When sampling from a model, and trying to extract the samples into a dataframe, I'm finding that it will crash the kernel. **To Reproduce** ```python import arviz...

The default when plotting multiple models with `plot_forest` is to have alternate row shading, like in the left hand plot here  I agree that this is good...

Following a discussion with @ricardoV94, it seems that we are pip installing pymc. We should instead install pymc in the [recommended manner](https://www.pymc.io/projects/docs/en/stable/installation.html). **We have the same issue over at CausalPy,...

Add `as_dataframe` method for group level design matrix

1

Simulated data: ```python groups = 3 samples_per_group = 10 N = groups * samples_per_group x = np.tile(np.linspace(0, 10, samples_per_group), groups) group = np.repeat(np.arange(groups), samples_per_group) y = 2 + -0.5 *...

I just noticed that the rendering of dataframes are bad in the docs. By way of example from https://bambinos.github.io/formulae/notebooks/getting_started.html#Creating-and-accessing-design-matrices This is what it looks like in Chrome: ![Screenshot 2023-06-17 at...

propose new `ConstrainedUniform` distribution

3

Following the discussion #5066 (with input from @aseyboldt), I propose a new `ConstrainedUniform` distribution. An ideal use case for this is as a distribution for cutpoints in an ordinal regression....