David Pellow

paired end read name problems

1

When using the latest version (0.7.17) of bwa mem it seems like paired-end reads (split in 2 files) must have names like read1/1 and read1/2 (using the "/" character), while...

circular genomes?

1

Is there an option for circular genomes (e.g. bacteria) so that some reads are generated spanning the end and returning back to the beginning?

Memory error with many reference genomes as input

16

I'm trying to run BCALM on a very large database and I keep getting errors that look like: ``` mem: [ 100, 91622, 92822] MB EXCEPTION: Pool reserve() failed for...

Is there a way to use timeshap, or to modify it, so that it will work for models that output at every time step and not just at the final...