error during refinem taxon_profile

[chloelulu]

nohup.txt Hi,

Thanks for this amazing software. Everything goes well but got an error during this procedure. I have checked the history reported issue. None is related to this. May I please have the help? code used: refinem taxon_profile -c 40 gene_output_dir/ scaffold/scaffold_stats.tsv /home/zzhang78/refinem_db/gtdb_r86_protein_db.2018-09-25.faa.dmnd /home/zzhang78/refinem_db/gtdb_r86_taxonomy.2018-09-25.tsv taxon_profile_output_dir -x faa

Error: Unexpected error: <type 'exceptions.KeyError'> Traceback (most recent call last): File "/home/zzhang78/miniconda2/envs/py27/bin/refinem", line 396, in <module> parser.parse_options(args) File "/home/zzhang78/miniconda2/envs/py27/lib/python2.7/site-packages/refinem/main.py", line 680, in parse_options self.taxon_profile(options) File "/home/zzhang78/miniconda2/envs/py27/lib/python2.7/site-packages/refinem/main.py", line 230, in taxon_profile options.tmpdir) File "/home/zzhang78/miniconda2/envs/py27/lib/python2.7/site-packages/refinem/taxon_profile.py", line 524, in run profile.write_scaffold_summary(scaffold_stats, scaffold_summary_out) File "/home/zzhang78/miniconda2/envs/py27/lib/python2.7/site-packages/refinem/taxon_profile.py", line 1130, in write_scaffold_summary scaffold_stats.print_stats(seq_id), File "/home/zzhang78/miniconda2/envs/py27/lib/python2.7/site-packages/refinem/scaffold_stats.py", line 354, in print_stats stats = self.stats[scaffold_id] KeyError: 'NODE_47_length_1279_cov_9.067810'

The detailed error output is in the attachment.

Appreciate it!