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Published 20 hours ago • verified publisher icon donovan-h-parks

Self hits do not have 100% OF

Open donovan-h-parks opened this issue 8 years ago • 2 comments

Self hits are currently reported as close to, but not 100% OF. Counting error?

donovan-h-parks avatar Nov 08 '16 15:11 donovan-h-parks

This is due to short, incomplete genes not meeting the minimum requirements for being reported. Probably such genes should be filtered from consideration so that the OF is more accurate.

donovan-h-parks avatar Nov 21 '16 17:11 donovan-h-parks

Probably best to fix this with a flag --ignore_incomplete where incomplete genes can optionally be ignored. In general, this is a very marginal case and most incomplete genes are long enough that considering them is the better default option.

donovan-h-parks avatar Nov 21 '16 19:11 donovan-h-parks