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Published 20 hours ago • verified publisher icon donovan-h-parks

aai workflow results gives 0 orthologous and 0 mean AAI

Open mosassi opened this issue 4 years ago • 2 comments

the aai statistics provided in aa_summary.tsv gives 0 mean AAI and 0 orthologous.

mosassi avatar Jul 01 '20 08:07 mosassi

Hi. There is a known issue with CompareM that can results in no homologs being identified when run on some Linux system. This is related to different implementations of 'sort'. Titus Brown has suggest a solution that addresses this for Mac OS X (https://hackmd.io/L2llRUU_SrWfI4OYN-uozQ?view). The AAI calculator from the Kostas Lab is an alternative solution.

donovan-h-parks avatar Jul 01 '20 13:07 donovan-h-parks

Dear developer, ComperM is a very popluar toolkit. I'm curious if it's possible to get a non-zero result from the intermediate result of a calculation such as query_genes.dmnd using another sort method? Thanks a lot.

neptuneyt avatar Jan 19 '24 09:01 neptuneyt