zhang dong

'compareset' error when using trimAL 1.2 on Windows

3

Dear developer, I experienced an error while using trimAL. When I using "trimal -compareset Api0000040.cmp" command. I got an error: "Alignment not loaded: "" Check the file's content.". I also...

dataset with mixed code tables

10

Dear developers, I am analyzing a Bilateria mitogenome dataset with multiple generic code tables (code tables 2, 5 and 9), but it appears that Hyphy only allows a single code...

https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/multi-gene-phylogeny/ PhyloSuite: from data acquisition to phylogenetic tree annotation (multi-gene dataset)

Quick start | PhyloSuite

2

https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/quick_start/ 1. InstallationPlease see https://dongzhang0725.github.io/dongzhang0725.github.io/installation/.

https://dongzhang0725.github.io/dongzhang0725.github.io/categories/index.html

https://dongzhang0725.github.io/dongzhang0725.github.io/example/ All examples can be downloaded from https://github.com/dongzhang0725/PhyloSuite/tree/master/example.

https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/how-to-configure-plugins/ Open the plugin settings window via Settings-->Settings in the menu bar. There are two ways to configure your plugins: 1. Specify executable fileWhen you have the plugins already installed...

https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/ When extracting sequences, you should use different settings for different data-types. PhyloSuite has five predefined data-types, Mitogenome, general, cox1, 16S and 18S, but you can easily add your ow

https://dongzhang0725.github.io/dongzhang0725.github.io/categories/

https://dongzhang0725.github.io/dongzhang0725.github.io/PhyloSuite-demo/muti-gene-phylogeny/#9-Flowchart PhyloSuite: from data acquisition to phylogenetic tree annotation (muti-gene dataset)