zhang dong

Dear Sergei, Thank you for your quick reply. My dataset matches the first case. There are 20-something phyla in our bilaterian dataset (a single alignment used to reconstruct the phloygeny)....

Dear Sergei We want to test the hypothesis of relaxation of selection pressures in selected test branches against the reference branches. for this we aimed to use RELAX. We also...

Dear Sergei We want to test the hypothesis of relaxation of selection pressures in selected test branches against the reference branches. for this we aimed to use RELAX. We also...

Dear Sergei, We are studying the correlation between parasitism and molecular evolution rates. Parasitism has multiple independent origins within the bilateria. In our dataset, Acanthocephala are 100% parasitic, whereas Nematoda,...

Dear Sergei, Thank you for your useful suggestions, currently we are running a subset dataset (around 250 species) which was selected to only contain all parasites and their closed-related free...

Dear @spond , We are trying to identify signatures of positive selection in TEST vs. BACKGROUND branches using aBSREL method. However, the output does not seem to provide test vs....

Dear @spond , Thank you for your reply. I encounterred the same error that I posted before when using a new dataset. ```### Fitting the alternative model to test K...

Dear Sergei, Thank you for your suggestion, I will try it. By the way, does BUSTED method benifit from MPI? Sincerely, Dong

Dear @spond , I tried your code (`hyphy CPU=30 RELAX --alignment concatenation.fas --code Echinoderm-mtDNA --tree tree_marked.tre --test Foreground --starting-points 5 ENV="TOLERATE_NUMERICAL_ERRORS=1;"`) on the "relax_run1_internal_error" dataset that I sent to you...

如果你不介意，可以把整个MrBayes运行的结果打包发给我看看。