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Taxon name Issues

Open CXna1108 opened this issue 1 year ago • 4 comments

老师,又来打扰您啦。就是我在跑树的时候出现了以下报错: Taxon name AB614504_1_Phyllocnistis_gracilistylella_mitochondrial_COI_gene_for_cytochrome_oxidase_subunit_I__partial_cds__country__Japan_Nagano__Nagano__Sai_gawa is too long. Maximun 99 characters is allowed. 由于我的序列较多,许多Taxon name的字符也很长,因此,我想问问老师有没有什么办法可以批量的将‘Taxon name'批量更改为只保留序列的序列号/登录号,而序列号/登录号后面的描述删除呢?

也给出了相对应的解决方案: 1.Deleting previously defined characters 2.Deleting previously defined taxa 还有以下的提示 Returning execution to command line... Error in command "Execute" Will exit with signal 1 (error) because quitonerror is set to yes If you want control to be returned to the command line on error, use 'mb -i ' (i is for interactive) or use 'set quitonerror=no' 所以我想请教一下,我在PhyloSuite工作界面中哪里可以设置 'set quitonerror=no。

CXna1108 avatar May 07 '23 02:05 CXna1108

提取的时候可以设置用什么作为序列名,比如说ID或者拉丁名

CXna1108 @.***> 于2023年5月7日周日 10:22写道:

老师,又来打扰您啦。就是我在跑树的时候出现了以下报错: Taxon name AB614504_1_Phyllocnistis_gracilistylella_mitochondrial_COI_gene_for_cytochrome_oxidase_subunit_I__partial_cds__country__Japan_Nagano__Nagano__Sai_gawa is too long. Maximun 99 characters is allowed. 由于我的序列较多,许多Taxon name的字符也很长,因此,我想问问老师有没有什么办法可以批量的将‘Taxon name'批量更改为只保留序列的序列号/登录号,而序列号/登录号后面的描述删除呢?

也给出了相对应的解决方案: 1.Deleting previously defined characters 2.Deleting previously defined taxa 还有以下的提示 Returning execution to command line... Error in command "Execute" Will exit with signal 1 (error) because quitonerror is set to yes If you want control to be returned to the command line on error, use 'mb -i ' (i is for interactive) or use 'set quitonerror=no' 所以我想请教一下,我在PhyloSuite工作界面中哪里可以设置 'set quitonerror=no。

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dongzhang0725 avatar May 07 '23 03:05 dongzhang0725

好的,那我提取序列的时候怎么知道自己的序列属于那一套密码表呢? 我的序列是昆虫的COI序列。

CXna1108 avatar May 07 '23 08:05 CXna1108

前阵子发表的那个protocol里面有介绍这个技巧

Chenxiaona @.***> 于2023年5月7日周日 16:58写道:

好的,那我提取序列的时候怎么知道自己的序列属于那一套密码表呢? 我的序列是昆虫的COI序列。

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dongzhang0725 avatar May 07 '23 09:05 dongzhang0725

好的

CXna1108 avatar May 07 '23 09:05 CXna1108