PhyloSuite 祖先性状重建

老师，您好，想问一下，您这边有做祖先性状重建方面的内容吗？

Nov 02 '21 01:11 35231

PhyloSuite目前不支持

Nov 02 '21 01:11 dongzhang0725

那您这边有这方面的相关分析软件吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月2日(周二) 上午9:54 收件人: @.>; 抄送: @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

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Nov 02 '21 02:11 35231

您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同

------------------ 原始邮件 ------------------ 发件人: "dongzhang0725/PhyloSuite" @.>; 发送时间: 2021年11月2日(星期二) 上午9:54 @.>; @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

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Nov 03 '21 12:11 35231

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同

------------------ 原始邮件 ------------------ 发件人: "dongzhang0725/PhyloSuite" @.>; 发送时间: 2021年11月2日(星期二) 上午9:54 @.>; @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

PhyloSuite目前不支持

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

Nov 03 '21 15:11 dongzhang0725

那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月3日(周三) 晚上11:10 收件人: @.>; 抄送: @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

> 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > ------------------ 原始邮件 ------------------ > 发件人: "dongzhang0725/PhyloSuite" @.>; > 发送时间: 2021年11月2日(星期二) 上午9:54 > @.>; > @.@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > PhyloSuite目前不支持 > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

Nov 04 '21 10:11 35231

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月3日(周三) 晚上11:10 收件人: @.>; 抄送: @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

步骤类似

35231 @.***> 于2021年11月3日周三下午8:59写道：

> 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > ------------------ 原始邮件 ------------------ > 发件人: "dongzhang0725/PhyloSuite" @.>; > 发送时间: 2021年11月2日(星期二) 上午9:54 > @.>; > @.@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > PhyloSuite目前不支持 > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > < https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>,

> or unsubscribe > < https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q>

> . > Triage notifications on the go with GitHub Mobile for iOS > < https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675>

> or Android > < https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

> >

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-960644115, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADZXXOIYCHCFUB7OSB4K2KTUKJQRJANCNFSM5HFJT75Q . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

Nov 04 '21 10:11 dongzhang0725

就是我想用一整条完整的叶绿体基因组序列进行建树，这样的话是直接讲gb文件转为fasta文件，然后进行比对就可以了还是？

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月4日(周四) 晚上6:57 收件人: @.>; 抄送: @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

> 那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？ > > > > ---原始邮件--- > 发件人: "zhang @.> > 发送时间: 2021年11月3日(周三) 晚上11:10 > 收件人: @.>; > 抄送: @.@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > 步骤类似 > > 35231 @.> 于2021年11月3日周三下午8:59写道： > > > 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > > > > > > > > ------------------&nbsp;原始邮件&nbsp;------------------ > > 发件人: "dongzhang0725/PhyloSuite" @.&gt;; > > 发送时间:&nbsp;2021年11月2日(星期二) 上午9:54 > > @.&gt;; > > @.@.***&gt;; > > 主题:&nbsp;Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > > > > > > > > PhyloSuite目前不支持 > > > > — > > You are receiving this because you authored the thread. > > Reply to this email directly, view it on GitHub, or unsubscribe. > > Triage notifications on the go with GitHub Mobile for iOS or Android. > > > > — > > You are receiving this because you commented. > > Reply to this email directly, view it on GitHub > > < > https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>, > > > or unsubscribe > > < > https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q> > > > . > > Triage notifications on the go with GitHub Mobile for iOS > > < > https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > > > or Android > > < > https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > > > > > > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-960644115>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOIYCHCFUB7OSB4K2KTUKJQRJANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

Nov 04 '21 11:11 35231

您好，打扰您一下，想问一下，比对序列进行修剪出现下面这个问题是什么原因呢？谢谢

---原始邮件--- 发件人: "zhang @.> 发送时间: 2021年11月4日(周四) 晚上6:57 收件人: @.>; 抄送: @.@.>; 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37)

按线粒体基因组的方式提取各个叶绿体基因，可能需要一点儿自定义，见： http://phylosuite.jushengwu.com/dongzhang0725.github.io/PhyloSuite-demo/customize_extraction/

35231 @.***> 于2021年11月4日周四下午6:51写道：

> 那这里面还要进行序列提取吗？提取序列的名称是写chlorophast gene 吗？ > > > > ---原始邮件--- > 发件人: "zhang @.> > 发送时间: 2021年11月3日(周三) 晚上11:10 > 收件人: @.>; > 抄送: @.@.>; > 主题: Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > 步骤类似 > > 35231 @.> 于2021年11月3日周三下午8:59写道： > > > 您好，这个用叶绿体全基因组建树是一样的是吗？还是操作步骤有所不同 > > > > > > > > > > > > > > ------------------&nbsp;原始邮件&nbsp;------------------ > > 发件人: "dongzhang0725/PhyloSuite" @.&gt;; > > 发送时间:&nbsp;2021年11月2日(星期二) 上午9:54 > > @.&gt;; > > @.@.***&gt;; > > 主题:&nbsp;Re: [dongzhang0725/PhyloSuite] 祖先性状重建 (Issue #37) > > > > > > > > > > > > > > PhyloSuite目前不支持 > > > > — > > You are receiving this because you authored the thread. > > Reply to this email directly, view it on GitHub, or unsubscribe. > > Triage notifications on the go with GitHub Mobile for iOS or Android. > > > > — > > You are receiving this because you commented. > > Reply to this email directly, view it on GitHub > > < > https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-959010964>, > > > or unsubscribe > > < > https://github.com/notifications/unsubscribe-auth/ADZXXOPMXNYWXVJDRWXR3SLUKEW4RANCNFSM5HFJT75Q> > > > . > > Triage notifications on the go with GitHub Mobile for iOS > > < > https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > > > or Android > > < > https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > > > > > > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub, or unsubscribe. > Triage notifications on the go with GitHub Mobile for iOS or Android. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <https://github.com/dongzhang0725/PhyloSuite/issues/37#issuecomment-960644115>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADZXXOIYCHCFUB7OSB4K2KTUKJQRJANCNFSM5HFJT75Q> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android.

Nov 05 '21 14:11 35231

我这里看不到相关问题的截图

Nov 29 '21 11:11 dongzhang0725

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祖先性状重建

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