dxWDL
dxWDL copied to clipboard
dnanexus
Workflow Description Language compiler for the DNAnexus platform
This PR was automatically created by Snyk using the credentials of a real user.Keeping your Docker base image up-to-date means you’ll benefit from security fixes in the latest version of...
Hi, thanks for the writeup, can you please provide an example as to how to specify the output folder in the JSON file? Say I want to output to a...
Right now I still notice that queries for existing applets and files can take a varying amount of time - sometimes quite long. My guess is that some of this...
Often with dxWDL, I want to be able to easily debug some task, especially by ssh'ing on to box with everything there. Potentially useful ways to accomplish this: 1. Be...
dxWDL currently waits for all inputs to all tasks inside an `if` block to be ready before submitting/processing any individual tasks, even when some tasks inside the block have all...
SF15975 Andrew from St. Jude can't download the symlinked data for running their wdl workflow on platform, and the streaming option degraded the performance quite a bit (samtools index does...
I like the pretty representation quite a bit - really nice and easy to read, but it'd be better if it included executable IDs. I.e., rather than this: ``` Workflow:...
For the purpose of comparing the same workflow run locally on Cromwell, vs remotely on dx, one needs to know the correspondence of input and output names . I know...
