Drop cell type in reference

[GCAT01]

Tried to run create.RCTD and got

Error in process_cell_type_info(reference, cell_type_names = cell_type_names,  : 
  process_cell_type_info error: need a minimum of 25 cells for each cell type in the reference

Is there an easy way to remove/ignore the cell types whose counts are too low?

[dmcable]

The easy way is to change the list of cell_type_names based on the counts of each cell type. This is intentionally not done automatically so that you know which cell types you are getting before running RCTD.