David Laehnemann

Check if we can get the curated SIGNOR database into a format that SPIA can use for its pathway enrichment analysis. It probably makes sense to start from this: https://signor.uniroma2.it/getPathwayData.php?relations

[FEATURE] make pypi recipes more robust by using the JSON API for retrieving download URL

2

**Is your feature request related to a problem? Please describe.** The following **motivating example** is one way that auto-generation of pypi recipe urls recently broke for me, but I guess...

fix: update CI workflow, snakemake wrappers and python / pandas code syntax

2

Instead, use the `.squeeze("columns")` function, as for example done here: https://github.com/sktime/sktime/pull/2693/files This closes #39, with more relevant info over there.

feature: make all solution chunks foldable and folded by default

1

I used this book to give an intro into R course, and it was very useful to teach both people without any prior programming or R experience, and those that...

also remove the dbplyr version pinning patch that should not be necessary any more

this then uses `datavzrd=2.36.10`

Currently, tests only work on VCF files. To properly test for any quirky differences in what pysam pulls out of BCF files, testing should be extended to also work on...