dkp
MRIqc is such an important tool. I'm delighted to see the update and improvements. WRT the legends, I'm assuming Ctx GM=cortical GM, dGM is deep GM, what is Crown?? Thanks...
This page includes 2 movies: https://mriqc.readthedocs.io/en/latest/reports.html I come away with the impression that someone should be talking us through the demo, but alas, the audio is greyed out.
The fmri summary plot for individuals has incredibly tiny print...unreadable! 
I am very disappointed that you have elected to remove the HTML rending capabilities from OOD. I understand that you had some security concerns, however, because the quality control reports...
I believe you may have dealt with similar topics, so sorry if this is a repetition... I don't see this explicitly in the issues. If I have 2 runs to...
**Describe the bug** I ran the docker container on linux calling pydeface: `docker run -i --rm -u $UID:$GID -v ${PWD}:/bids_dataset peerherholz/bidsonym /bids_dataset participant --deid pydeface --participant_label 219 --brainextraction bet --bet_frac...
We have two runs of rsfmri in a single session: ``` tree inputs/sub-219/ses-itbs/func inputs/sub-219/ses-itbs/func ├── sub-219_ses-itbs_task-rest_run-01_bold.json ├── sub-219_ses-itbs_task-rest_run-01_bold.nii.gz ├── sub-219_ses-itbs_task-rest_run-01_events.tsv ├── sub-219_ses-itbs_task-rest_run-02_bold.json ├── sub-219_ses-itbs_task-rest_run-02_bold.nii.gz └── sub-219_ses-itbs_task-rest_run-02_events.tsv ``` I'd like to...
fmriprep uses fieldmaps (magnitude and phasediff) to correct distortion in bold images. It also allows a simple RPE image of the main bold data. Could you implement some of these...
Sorry, this is more a question than an issue: Is there a difference between the cifti files that fmriprep can generate, and your cifti files? Thanks so much, Dianne
- I am attempting to preprocess a Siemens Skyra PASL file. -Together with our Biomedical Engineers, we've done our best to add appropriate metadata required by BIDS validator, but not...